DRX248829
Illumina NovaSeq 6000 sequencing of SAMD00202670

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEN1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
Menin_ChIP-2
antibody
Menin
biomaterial_provider
ATCC
cell_line
HeLa
cell_type
Human cervix epitheloid carcinoma

Sequenced DNA Library

library_name
Menin_ChIP-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53314008
Reads aligned (%)
98.7
Duplicates removed (%)
23.8
Number of peaks
607 (qval < 1E-05)

hg19

Number of total reads
53314008
Reads aligned (%)
98.1
Duplicates removed (%)
25.1
Number of peaks
616 (qval < 1E-05)

Base call quality data from DBCLS SRA